diff --git a/.idea/modules.xml b/.idea/modules.xml
index dc441f0841..d51ade6a36 100644
--- a/.idea/modules.xml
+++ b/.idea/modules.xml
@@ -6,11 +6,11 @@
       <module fileurl="file://$PROJECT_DIR$/dev/devicelab/devicelab.iml" filepath="$PROJECT_DIR$/dev/devicelab/devicelab.iml" />
       <module fileurl="file://$PROJECT_DIR$/packages/flutter/flutter.iml" filepath="$PROJECT_DIR$/packages/flutter/flutter.iml" />
       <module fileurl="file://$PROJECT_DIR$/packages/flutter_driver/flutter_driver.iml" filepath="$PROJECT_DIR$/packages/flutter_driver/flutter_driver.iml" />
-      <module fileurl="file://$PROJECT_DIR$/examples/flutter_gallery/.idea/flutter_gallery.iml" filepath="$PROJECT_DIR$/examples/flutter_gallery/.idea/flutter_gallery.iml" />
+      <module fileurl="file://$PROJECT_DIR$/examples/flutter_gallery/flutter_gallery.iml" filepath="$PROJECT_DIR$/examples/flutter_gallery/flutter_gallery.iml" />
       <module fileurl="file://$PROJECT_DIR$/packages/flutter_markdown/flutter_markdown.iml" filepath="$PROJECT_DIR$/packages/flutter_markdown/flutter_markdown.iml" />
       <module fileurl="file://$PROJECT_DIR$/packages/flutter_test/flutter_test.iml" filepath="$PROJECT_DIR$/packages/flutter_test/flutter_test.iml" />
       <module fileurl="file://$PROJECT_DIR$/packages/flutter_tools/flutter_tools.iml" filepath="$PROJECT_DIR$/packages/flutter_tools/flutter_tools.iml" />
-      <module fileurl="file://$PROJECT_DIR$/examples/hello_world/.idea/hello_world.iml" filepath="$PROJECT_DIR$/examples/hello_world/.idea/hello_world.iml" />
+      <module fileurl="file://$PROJECT_DIR$/examples/hello_world/hello_world.iml" filepath="$PROJECT_DIR$/examples/hello_world/hello_world.iml" />
     </modules>
   </component>
 </project>
\ No newline at end of file
diff --git a/dev/bots/bots.iml b/dev/bots/bots.iml
index 8021953ed9..4e65c349af 100644
--- a/dev/bots/bots.iml
+++ b/dev/bots/bots.iml
@@ -2,7 +2,11 @@
 <module type="WEB_MODULE" version="4">
   <component name="NewModuleRootManager" inherit-compiler-output="true">
     <exclude-output />
-    <content url="file://$MODULE_DIR$" />
+    <content url="file://$MODULE_DIR$">
+      <excludeFolder url="file://$MODULE_DIR$/.pub" />
+      <excludeFolder url="file://$MODULE_DIR$/build" />
+      <excludeFolder url="file://$MODULE_DIR$/packages" />
+    </content>
     <orderEntry type="inheritedJdk" />
     <orderEntry type="sourceFolder" forTests="false" />
   </component>
diff --git a/packages/flutter_tools/flutter_tools.iml b/packages/flutter_tools/flutter_tools.iml
index 2ff070a2d2..2efda708b0 100644
--- a/packages/flutter_tools/flutter_tools.iml
+++ b/packages/flutter_tools/flutter_tools.iml
@@ -7,6 +7,14 @@
       <excludeFolder url="file://$MODULE_DIR$/bin/packages" />
       <excludeFolder url="file://$MODULE_DIR$/build" />
       <excludeFolder url="file://$MODULE_DIR$/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_package/.pub" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_package/build" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_package/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_path/.pub" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_path/build" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/bad_path/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/changed_sdk_location/.pub" />
+      <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/changed_sdk_location/build" />
       <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/changed_sdk_location/lib/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/changed_sdk_location/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/data/dart_dependencies_test/good/.pub" />
@@ -23,6 +31,13 @@
       <excludeFolder url="file://$MODULE_DIR$/test/data/intellij/plugins/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/data/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/simulator_application_binary/file/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/simulator_application_binary/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/simulator_application_binary/platform/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/simulator_application_binary/process/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/osx/simulator_application_binary/vmservice/packages" />
+      <excludeFolder url="file://$MODULE_DIR$/test/replay/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/src/base/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/src/ios/packages" />
       <excludeFolder url="file://$MODULE_DIR$/test/src/packages" />